PoplarV1, Main, Exploration, bibRecord, 000639

WRKYs, the Jack-of-various-Trades, Modulate Dehydration Stress in Populus davidiana-A Transcriptomic Approach.

Identifieur interne : 000639 ( Main/Exploration ); précédent : 000638; suivant : 000640

WRKYs, the Jack-of-various-Trades, Modulate Dehydration Stress in Populus davidiana-A Transcriptomic Approach.

Auteurs : Qari Muhammad Imran [Corée du Sud] ; Sang-Uk Lee [Corée du Sud] ; Bong-Gyu Mun [Corée du Sud] ; Adil Hussain [Pakistan] ; Sajjad Asaf [Oman] ; In-Jung Lee [Corée du Sud] ; Byung-Wook Yun [Corée du Sud]

Source :

International journal of molecular sciences [ 1422-0067 ] ; 2019.

RBID : pubmed:30669402

Descripteurs français

English descriptors

KwdEn :
- Adaptation, Biological (MeSH), Amino Acid Sequence (MeSH), Chromosome Mapping (MeSH), Computational Biology (methods), Conserved Sequence (MeSH), Dehydration (genetics), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (MeSH), Gene Ontology (MeSH), Phenotype (MeSH), Phylogeny (MeSH), Plant Proteins (MeSH), Populus (genetics), Populus (metabolism), Signal Transduction (MeSH), Stress, Physiological (genetics), Transcription Factors (metabolism), Transcriptome (MeSH).
MESH :
- chemical , metabolism : Transcription Factors.
- chemical : Plant Proteins.
- genetics : Dehydration, Populus, Stress, Physiological.
- metabolism : Populus.
- methods : Computational Biology.
- Adaptation, Biological, Amino Acid Sequence, Chromosome Mapping, Conserved Sequence, Gene Expression Profiling, Gene Expression Regulation, Plant, Gene Ontology, Phenotype, Phylogeny, Signal Transduction, Transcriptome.

Abstract

Populus davidiana, native to Korea and central Asian countries, is a major contributor to the Korean forest cover. In the current study, using high-throughput RNA-seq mediated transcriptome analysis, we identified about 87 P. davidiana WRKY transcription factors (PopdaWRKY TFs) that showed differential expression to dehydration stress in both sensitive and tolerant cultivars. Our results suggested that, on average, most of the WRKY genes were upregulated in tolerant cultivars but downregulated in sensitive cultivars. Based on protein sequence alignment, P. davidiana WRKYs were classified into three major groups, I, II, III, and further subgroups. Phylogenetic analysis showed that WRKY TFs and their orthologs in Arabidopsis and rice were clustered together in the same subgroups, suggesting similar functions across species. Significant correlation was found among qRT-PCR and RNA-seq analysis. In vivo analysis using model plant Arabidopsis showed that atwrky62 (orthologous to Potri.016G137900) knockout mutants were significantly sensitive to dehydration possibly due to an inability to close their stomata under dehydration conditions. In addition, a concomitant decrease in expression of ABA biosynthetic genes was observed. The AtHK1 that regulates stomatal movement was also downregulated in atwrky62 compared to the wild type. Taken together, our findings suggest a regulatory role of PopdaWRKYs under dehydration stress.

DOI: 10.3390/ijms20020414
PubMed: 30669402
PubMed Central: PMC6358917

Affiliations:

Corée du Sud, Oman, Pakistan

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<term>Amino Acid Sequence (MeSH)</term>
<term>Chromosome Mapping (MeSH)</term>
<term>Computational Biology (methods)</term>
<term>Conserved Sequence (MeSH)</term>
<term>Dehydration (genetics)</term>
<term>Gene Expression Profiling (MeSH)</term>
<term>Gene Expression Regulation, Plant (MeSH)</term>
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<term>Phylogeny (MeSH)</term>
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<term>Populus (metabolism)</term>
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<term>Biologie informatique (méthodes)</term>
<term>Cartographie chromosomique (MeSH)</term>
<term>Déshydratation (génétique)</term>
<term>Facteurs de transcription (métabolisme)</term>
<term>Gene Ontology (MeSH)</term>
<term>Phylogenèse (MeSH)</term>
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<term>Populus (génétique)</term>
<term>Populus (métabolisme)</term>
<term>Protéines végétales (MeSH)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Stress physiologique (génétique)</term>
<term>Séquence conservée (MeSH)</term>
<term>Séquence d'acides aminés (MeSH)</term>
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<term>Signal Transduction</term>
<term>Transcriptome</term>
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<term>Analyse de profil d'expression de gènes</term>
<term>Cartographie chromosomique</term>
<term>Gene Ontology</term>
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<front><div type="abstract" xml:lang="en"><i>Populus davidiana</i>
, native to Korea and central Asian countries, is a major contributor to the Korean forest cover. In the current study, using high-throughput RNA-seq mediated transcriptome analysis, we identified about 87 <i>P. davidiana</i>
 WRKY transcription factors (PopdaWRKY TFs) that showed differential expression to dehydration stress in both sensitive and tolerant cultivars. Our results suggested that, on average, most of the WRKY genes were upregulated in tolerant cultivars but downregulated in sensitive cultivars. Based on protein sequence alignment, <i>P. davidiana</i>
 WRKYs were classified into three major groups, I, II, III, and further subgroups. Phylogenetic analysis showed that WRKY TFs and their orthologs in Arabidopsis and rice were clustered together in the same subgroups, suggesting similar functions across species. Significant correlation was found among qRT-PCR and RNA-seq analysis. In vivo analysis using model plant Arabidopsis showed that <i>atwrky62</i>
 (orthologous to Potri.016G137900) knockout mutants were significantly sensitive to dehydration possibly due to an inability to close their stomata under dehydration conditions. In addition, a concomitant decrease in expression of ABA biosynthetic genes was observed. The <i>AtHK1</i>
 that regulates stomatal movement was also downregulated in <i>atwrky62</i>
 compared to the wild type. Taken together, our findings suggest a regulatory role of PopdaWRKYs under dehydration stress.</div>
</front>
</TEI>
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<DateCompleted><Year>2019</Year>
<Month>05</Month>
<Day>01</Day>
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<DateRevised><Year>2020</Year>
<Month>02</Month>
<Day>25</Day>
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<Title>International journal of molecular sciences</Title>
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<ArticleTitle>WRKYs, the Jack-of-various-Trades, Modulate Dehydration Stress in Populus davidiana-A Transcriptomic Approach.</ArticleTitle>
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<ELocationID EIdType="doi" ValidYN="Y">10.3390/ijms20020414</ELocationID>
<Abstract><AbstractText><i>Populus davidiana</i>
, native to Korea and central Asian countries, is a major contributor to the Korean forest cover. In the current study, using high-throughput RNA-seq mediated transcriptome analysis, we identified about 87 <i>P. davidiana</i>
 WRKY transcription factors (PopdaWRKY TFs) that showed differential expression to dehydration stress in both sensitive and tolerant cultivars. Our results suggested that, on average, most of the WRKY genes were upregulated in tolerant cultivars but downregulated in sensitive cultivars. Based on protein sequence alignment, <i>P. davidiana</i>
 WRKYs were classified into three major groups, I, II, III, and further subgroups. Phylogenetic analysis showed that WRKY TFs and their orthologs in Arabidopsis and rice were clustered together in the same subgroups, suggesting similar functions across species. Significant correlation was found among qRT-PCR and RNA-seq analysis. In vivo analysis using model plant Arabidopsis showed that <i>atwrky62</i>
 (orthologous to Potri.016G137900) knockout mutants were significantly sensitive to dehydration possibly due to an inability to close their stomata under dehydration conditions. In addition, a concomitant decrease in expression of ABA biosynthetic genes was observed. The <i>AtHK1</i>
 that regulates stomatal movement was also downregulated in <i>atwrky62</i>
 compared to the wild type. Taken together, our findings suggest a regulatory role of PopdaWRKYs under dehydration stress.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Imran</LastName>
<ForeName>Qari Muhammad</ForeName>
<Initials>QM</Initials>
<Identifier Source="ORCID">0000-0002-7072-451X</Identifier>
<AffiliationInfo><Affiliation>Laboratory of Plant Functional Genomics, School of Applied Biosciences, Kyungpook National University, Daegu 41566, Korea. mimranbot@gmail.com.</Affiliation>
</AffiliationInfo>
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<Initials>SU</Initials>
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<AffiliationInfo><Affiliation>Laboratory of Plant Functional Genomics, School of Applied Biosciences, Kyungpook National University, Daegu 41566, Korea. uk0gam@gmail.com.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Mun</LastName>
<ForeName>Bong-Gyu</ForeName>
<Initials>BG</Initials>
<AffiliationInfo><Affiliation>Laboratory of Plant Functional Genomics, School of Applied Biosciences, Kyungpook National University, Daegu 41566, Korea. mun0301@naver.com.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Hussain</LastName>
<ForeName>Adil</ForeName>
<Initials>A</Initials>
<Identifier Source="ORCID">0000-0002-7803-429X</Identifier>
<AffiliationInfo><Affiliation>Department of Agriculture, Abdul Wali Khan University, Mardan 23200, Pakistan. adilhussain@awkum.edu.pk.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Asaf</LastName>
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<Initials>S</Initials>
<AffiliationInfo><Affiliation>Natural and Medical Sciences Research Center, University of Nizwa, Nizwa 616, Oman. sajadasif2000@gmail.com.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Lee</LastName>
<ForeName>In-Jung</ForeName>
<Initials>IJ</Initials>
<AffiliationInfo><Affiliation>Laboratory of Plant Physiology, School of Applied Biosciences, Kyungpook National University, Daegu 41566, Korea. ijlee@knu.ac.kr.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Yun</LastName>
<ForeName>Byung-Wook</ForeName>
<Initials>BW</Initials>
<Identifier Source="ORCID">0000-0002-5451-2365</Identifier>
<AffiliationInfo><Affiliation>Laboratory of Plant Functional Genomics, School of Applied Biosciences, Kyungpook National University, Daegu 41566, Korea. bwyun@knu.ac.kr.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<GrantList CompleteYN="Y"><Grant><GrantID>S111415L070140</GrantID>
<Agency>Korea Forest Research Institute, Republic of Korea</Agency>
<Country></Country>
</Grant>
</GrantList>
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</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2019</Year>
<Month>01</Month>
<Day>18</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>Switzerland</Country>
<MedlineTA>Int J Mol Sci</MedlineTA>
<NlmUniqueID>101092791</NlmUniqueID>
<ISSNLinking>1422-0067</ISSNLinking>
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<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance>
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<MeshHeadingList><MeshHeading><DescriptorName UI="D000220" MajorTopicYN="N">Adaptation, Biological</DescriptorName>
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<MeshHeading><DescriptorName UI="D002874" MajorTopicYN="N">Chromosome Mapping</DescriptorName>
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<MeshHeading><DescriptorName UI="D019295" MajorTopicYN="N">Computational Biology</DescriptorName>
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<MeshHeading><DescriptorName UI="D017124" MajorTopicYN="N">Conserved Sequence</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D003681" MajorTopicYN="N">Dehydration</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D063990" MajorTopicYN="N">Gene Ontology</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010641" MajorTopicYN="N">Phenotype</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName>
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WRKYs, the Jack-of-various-Trades, Modulate Dehydration Stress in Populus davidiana-A Transcriptomic Approach.

WRKYs, the Jack-of-various-Trades, Modulate Dehydration Stress in Populus davidiana-A Transcriptomic Approach.

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